THE TRANSLATIONAL POSSIBILITY OF TARGETING LncRNAs AS A THERAPEUTIC STRATEGY FOR IDIOPATHIC PULMONARY FIBROSIS

Authors

  • RAKESH KUMAR YADAV Department of Pharmacy, Dalian Medical University, Dalian, China.
  • SHYAM SHAH Department of Pharmacovigilance, USAID, MTAPs Program, Nepal.
  • AMIT KUMAR SHRIVASTAVA Department of Pharmacology, Universal College of Medical Sciences, Bhairahawa, Rupandehi, Nepal. https://orcid.org/0000-0002-8915-9186
  • JIAN GAO Department of Pharmacy, Dalian Medical University, Dalian, China.

DOI:

https://doi.org/10.22159/ajpcr.2022.v15i4.44143

Keywords:

Pulmonary fibrosis, LncRNAs, Idiopathic Lungs disease

Abstract

Idiopathic pulmonary fibrosis (IPF) is an interstitial lung disease (ILD). IPF causes stiffness in the lungs which makes it difficult to breathe and get oxygen to the bloodstream. IPF is a particularly severe form of lung fibrosis with no completely known etiology and a median survival of 2.5−3.5 years after diagnosis. The phenotypic changes in the lung fibroblasts are believed to contribute to the development of idiopathic pulmonary fibrosis. Long intergenic non-coding RNAs (LncRNAs) have been identified as novel regulators of gene expression and protein activity. In non-stimulated cells, it showed reduced proliferation and inflammation but no difference in the fibrotic response of IPF fibroblasts. These functional changes in non-stimulated cells were associated with changes in the expression of the histone marks, H3K4me1, H3K4me3, and H3K27ac indicating a possible involvement of epigenetics. Following activation with TGF-β1 and IL-1β, it demonstrated an increased fibrotic but reduced inflammatory response in IPF fibroblasts. No significant difference in proliferation following PDGF exposure was observed. The LncRNAs, LINC00960, and LINC01140 were upregulated in IPF fibroblasts. Knockdown studies showed that LINC00960 and LINC01140 were positive regulators of proliferation in both control and IPF fibroblasts but had no effect on the fibrotic response. Knockdown of LINC01140 but not LINC00960 increased the inflammatory response, which was greater in IPF compared to control fibroblasts. Overall, this review study tries to emphasize the role of LncRNAs as regulators of proliferation and inflammation in human lung fibroblast, a biomarker in IPF, and a novel treatment approach.

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References

Lu D, Burris HA 3rd, Wang B, Dees EC, Cortes J, Joshi A, et al. Drug interaction potential of trastuzumab emtansine (T-DM1) combined with pertuzumab in patients with HER2-positive metastatic breast cancer. Lu D, A Burris III H. Curr Drug Metab 2012;13:911-22.

Selman M, López-Otín C, Pardo A. Age-driven developmental drift in the pathogenesis of idiopathic pulmnary fibrosis. Eur Res J 2016;48:538-52.

Meltzer EB, Noble PW. Idiopathic pulmonary fibrosis. Orphanet J Rare Dis 2008;3:8.

King TE Jr., Pardo A, Selman MJ. Idiopathic pulmonary fibrosis. Lancet 2011;378:1949-61.

Renzoni EA, Poletti V, Mackintosh JA. Disease pathology in fibrotic interstitial lung disease: Is it all about usual interstitial pneumonia? Lancet 2021;398:1437-49.

Antoine M. Interstitial Lung Disease. Treasure Island, FL: StatPearls; 2021.

American Thoracic Society; European Respiratory Society. American thoracic society/European respiratory society international multidisciplinary consenus and classification of the idiopathic interstitial pneumonias. This joint statement of the American Thoracic Society (ATS), and the European Respiratory Society (ERS) was adopted by the ATS board of directors, June 2001 and by the ERS Executive Committee, June 2001. Am J Respir Crit Care Med 2002; 15;165:277-304.

Travis WD, King TE, Bateman ED, Lynch DA, Capron F, Center D, et al. American Thoracic Society/European Respiratory Society international multidisciplinary consensus classification of the idiopathic interstitial pneumonias. Am J Respir Crit Care Med 2002;165:277-304.

King TE, Pardo A, Selman M. Idiopathic pulmonary fibrosis. Lancet 2011;378:1949-61.

Wolters PJ, Collard HR, Jones KD. Pathogenesis of idiopathic pulmonary fibrosis. Annu Rev Pathol 2014;9:157-79.

Raghu G, Myers JL, Richeldi L, Ryerson JC, Lederer JD, Cottin V, et al. Diagnosis of IPF. Am J Respir Crit Care Med 2018;198:e44-68.

Yang J, Velikoff M, Canalis E, Horowitz JC, Kim KK. Activated alveolar epithelial cells initiate fibrosis through autocrine and paracrine secretion of connective tissue growth factor. Am J Physiol Lung Cell Mol Physiol 2014;306:L786-96.

Camelo A, Dunmore R, Sleeman MA, Clarke DL. The epithelium in idiopathic pulmonary fibrosis: Breaking the barrier. Front Pharmacol 2014;4:173.

Zhang S, Yue D, Blackwell TS, Lv C, Song X. lncRNAs: Promising new targets in pulmonary fibrosis. J Gene Med 2021;23:3318.

Pulmonary Fibrosis Types [Press Release]. Pulmonary Fibrosis News; 2021. Available from: https://pulmonaryfibrosisnews.com

Maher TM, Bendstrup E, Dron L, Langley J, Smith G, Khalid JM, et al. Global incidence and prevalence of idiopathic pulmonary fibrosis. Respir Res 2021;22:197.

Sauleda J, Núñez B, Sala E, Soriano JB. Idiopathic pulmonary fibrosis: Epidemiology, natural history, phenotypes. Med Sci (Basel) 2018;6:110.

Olson AL, Swigris JJ, Lezotte DC, Norris JM, Wilson CG, Brown KK. Mortality from pulmonary fibrosis increased in the United States from 1992 to 2003. Am J Respir Crit Care Med 2007;176:277-84.

Raghu G, Nicholson AG, Lynch D. The classification, natural history and radiological/histological appearance of idiopathic pulmonary fibrosis and the other idiopathic interstitial pneumonias. Eur Respir Rev 2008;17:108-15.

Heukels P, Moor CC, Von der Thüsen JH, Wijsenbeek MS, Kool M. Inflammation and immunity in IPF pathogenesis and treatment. Respir Med 2019;147:79-91.

Wolters JP, Jones KD. Pathogenesis of IPF. Annu Rev Pathol 2014;9:157-79.

Bellaye PS, Kolb M. Why do patients get idiopathic pulmonary fibrosis? Current concepts in the pathogenesis of pulmonary fibrosis. BMC Med 2015;13:176.

Wuyts WA, Agostini C, Antoniou KM, Bouros D, Chambers RC, Cottin V, et al. The pathogenesis of pulmonary fibrosis: A moving target. Eur Respir J 2013;41:1207-18.

van Moorsel CH, Hoffman TW, van Batenburg AA, Klay D, van der Vis JJ, Grutters JC. Understanding idiopathic interstitial pneumonia: A gene-based review of stressed lungs. Biomed Res Int 2015;2015:304186.

Palmucci S, Roccasalva F, Puglisi S, Torrisi SE, Vindigni V, Mauro LA, et al. Clinical and radiological features of idiopathic interstitial pneumonias (IIPs): A pictorial review. Insights Imaging 2014;5:347-64.

Ghisa M, Marinelli C, Savarino V, Savarino E. Idiopathic pulmonary fibrosis and GERD: Links and risks. Ther Clin Risk Manag 2019;15:1081-93.

Gnanapandithan K, Popkin JH, Devadoss R, Martin K. Gastroesophageal reflux and idiopathic pulmonary fibrosis: A long term relationship. Respir Med Case Rep 2016;17:40-3.

Jo HE, Corte TJ, Glaspole I, Grainge C, Hopkins PM, Moodley Y, et al. Gastroesophageal reflux and antacid therapy in IPF: Analysis from the Australia IPF registry. BMC Pulm Med 2019;19:84.

Iismaa SE, Kaidonis X, Nicks AM, Bogush N, Kikuchi K, Naqvi N, et al. Comparative regenerative mechanisms across different mammalia tissues. Npj Reg Med 2018;3:6.

Desai O, Winkler J, Minasyan M, Herzog EL. The role of immune and inflammatory cells in idiopathic pulmonary fibrosis. Front Med (Lausanne) 2018;5:43.

Maher TM, Wells AU, Laurent GJ. Idiopathic Pulmonary Fibrosis: multiple cause and Multiple mechanism? Eur Res J 2007;30:835-9.

Kolahian S, Fernandez IE, Eickelberg O, Hartl D. Immune mechanisms in pulmonary fibrosis. Am J Respir Cell Mol Biol 2016;55:309-22.

Statello L, Guo CJ, Chen LL, Huarte MM. Gene regulation by long non-coding RNAs and its biological functions. Nat Rev Mol Cell Biol 2021;22:96-118.

Liu P, Zhao L, Gu Y, Zhang M, Gao H, Meng Y. LncRNA SNHG16 promotes pulmonary fibrosis by targeting miR-455-3p to regulate the Notch2 pathway. Respir Res 2021;22:44.

Zhan H, Sun X, Wang X, Gao Q, Yang M, Liu H, et al. LncRNA MEG3 involved in NiO NPs-induced pulmonary fibrosis via regulating TGF- β1-mediated PI3K/AKT pathway. Toxicol Sci 2021;182:120-31.

Lin S, Zhang R, Xu L, Ma R, Xu L, Zhu L, et al. LncRNA Hoxaas3 promotes lung fibroblast activation and fibrosis by targeting miR-450b-5p

to regulate Runx1. Cell Death Dis 2020;11:706.

Lin S, Zhang R, An X, Li Z, Fang C, Pan B, et al. LncRNA HOXA-AS3 confers cisplatin resistance by interacting with HOXA3 in non-small-cell lung carcinoma cells. Oncogenesis 2019;8:60.

Aschner Y, Downey GP. Transforming growth factor-β: Master resulator of the respiratory system in health and disease. Am J Respir Cell Mol Biol 2016;54:647-55.

Zhang R, Xu L, An X, Sui X, Lin S. Astragalus polysaccharides attenuate pulmonary fibrosis by inhibiting the epithelial-mesenchymal transition and NF-κB pathway activation. Int J Mol Med 2020;46:331-9.

Frangogiannis NG. Transforming growth factor-β in tissue fibrosis. J Exp Med 2020;217:e20190103.

Walton KL, Johnson KE, Harrison CA. Targeting TGF-β mediated SMAD signaling for the prevention of fibrosis. Front Pharmacol 2017;8:1-11.

Sakamoto K, Xylourgidis N, Omote N, Adams T, Yu G, Ahangari F, et al. Decreased expression of FENDRR, a lung mesenchymal long non-coding RNA, regulates fibroblast phenotypes in IPF through NOX4. Eur Res J 2017;50:2909.

Huang C, Liang Y, Zeng X, Yang X, Xu D, Gou X, et al. Long noncoding RNA FENDRR exhibits antifibrotic activity in Pulmonary fibrosis. Am J Respir Cell Mol Biol 2020;62:440-53.

Ye Z, Hu YJ. TGF-β1: Gentlemanly orchestrator in idiopathic pulmonary fibrosis. Int J Mol Med 2021;48:1-14.

Sontake V, Kasam RK, Sinner D, Korfhagen TR, Reddy GB, White ES, et al. Wilms’ tumor 1 drives fibroproliferation and myofibroblast transformation in severe fibrotic lung disease. JCI Insight 2018;3:e121252.

Huang C, Xiao X, Yang Y, Mishra A, Liang Y, Zeng X, et al. MicroRNA-101 attenuates pulmonary fibrosis by inhibiting fibroblast proliferation and activation. J Biol Chem 2017;292:16420-39.

Senavirathna LK, Liang Y, Huang C, Yang X, Bamunuarachchi G, Xu D, et al. Long noncoding rna fendrr inhibits lung fibroblast proliferation via a reduction of β-catenin. Int J Mol Sci 2021;22:8536.

Jiang H, Chen Y, Yu T, Zhao X, Shan H, Sun J, et al. Inhibition of lncRNA PFRL prevents pulmonary fibrosis by disrupting the miR-26a/ smad2 loop. Am J Physiol Lung Cell Mol Physiol 2018;315:L563-75.

Ghafouri-Fard S, Abak A, Talebi SF, Shoorei H, Branicki W, Taheri M, et al. Role of miRNA and lncRNAs in organ fibrosis and aging. Biomed Pharmacother 2021;143:112132.

Yi H, Luo D, Xiao Y, Jiang D. Knockdown of long non-coding RNA DLEU2 suppresses idiopathic pulmonary fibrosis by regulating the microRNA-3o/TRIM2 axis. Int J Mol Med 2021;47:80.

Yi H, Luo D, Xiao Y, Jiang DJ. Knockdown of long non-coding RNA DLEU2 suppresses idiopathic pulmonary fibrosis by regulating the microRNA-369-3p/TRIM2 axis. Int J Mol Med 2021;47:80.

Gao Y, Zhang J, Liu Y, Zhang S, Wang Y, Liu B, et al. Regukation of TERRA on telomeric and mitochondrial functions in IPF pathogenesis. BMC Pulm Med 2017;17:163.

Aalbers AM, Kajigaya S, van den Heuvel-Eibrink MM, van der Velden VH, Calado RT, Young NS. Human telomere disease due to disruption of the CCAAT box of the TERC promoter. Blood 2012;119:3060-3.

Gao Y, Zhang J, Liu Y, Zhang S, Wang Y, Liu B, et al. Regulation of TERRA on telomeric and mitochondrial functions in IPF pathogenesis. BMC Pulm Med 2017;17:163.

Arish N, Petukhov D, Wallach-Dayan SB. The role of telomerase and telomeres in interstitial lung diseases: From molecules to clinical implications. Int J Mol Sci 2019;20:2996.

Wang Y, Xiao H, Zhao F, Li H, Gao R, Yan B, et al. Decrytping the crosstalk of noncoding RNAs in the progression of IPF. Mol Bio Rep 2020;47:3169-79.

Hadjicharalambous MR, Lindsay MA. Idiopathic pulmonary fibrosis: Pathogenesis and the emerging role of long non-coding RNAs. Int J Mol Sci 2020;21:524.

Zhang S, Chen H, Yue D, Blackwell TS, Lv C, Song XJ. Long non‐coding RNAs: promising new targets in pulmonary fibrosis. J Gene Med 2021;23:e3318.

Kung JT, Colognori D, Lee JT. Long noncoding RNAs: Past, present, and future. Genetics 2013;193:651-69.

Ghafouri-Fard S, Poulet C, Malaise M, Abak A, Taheri M, Taheriazam A. The emerging role of non-coding RNAs in osteoarthritis. Front Immunol 2021;5065:1-16.

Xu P, Xiao H, Yang Q, Hu R, Jiang L, Bi R, et al. The USP21/YY1/ SNHG16 axis contributes to tumor proliferation, migration, and 62. Chen T, Guo Y, Wang J, Ai L, Ma L, He W, et al. LncRNA CTD- 2528L19.6 prevents the progression of IPF by alleviating fibroblast activation. Cell Death Dis 2021;12:600.

He Z, Yang D, Fan X, Zhang M, Li Y, Gu X, et al. The roles and mechanisms of lncRNAs in liver fibrosis. Int J Mol Sci 2020;21:1482.

Barratt SL, Flower VA, Pauling JD, Millar AB. VEGF (Vasc endothelial growth factor) Fibrotic Lung Dis 2018;19:1269.

Park JS, Park YS, Lee SM, Yim JJ, Yoo CG, Kim YW. Clinical significance of mTOR, ROCK1 expression in lung tissues of pulmonary fibrois patients. BMC Pulm Med 2014;14:168.

Qian W, Cai X, Qian Q, Peng W, Yu J, Zhang X, et al. lncRNA ZEB1- AS1 promotes pulmonary fibrosis through ZEB1-mediated epithelial– mesenchymal transition by competitively binding miR-141-3p. Cell Death Dis 2019;10:129.

Qian W, Cai X, Qian QJA. Sirt1 antisense long non-coding RNA attenuates pulmonary fibrosis through sirt1-mediated epithelial-mesenchymal transition. Aging 2020;12:4322-36.

Li J, Zhao Y, Zhou S, Zhou Y, Lang L. Inferring lncRNA functional similarity based on integrating heterogenous network data. Front Bioeng Biotechnol 2020;10:27.

Dykes IM, Emanueli CJ. Transcriptional and post-transcriptional gene regulation by long non-coding RNA. Genomics Proteomics Bioinformatics 2017;15:177-86.

Groot M, Zhang D, Jin Y. Long non-coding RNA review and implications in lung diseases. JSM Bioinform Genom Proteom 2018;3:1033.

Randolph AG. Management of acute lung injury and acute respiratory distress syndrome in children. Crit Care Med 2009;37:2448-54.

Matthay MA, Zemans RL, Zimmerman GA, Arabi YM, Beitler JR, Mercat A, et al. Acute respiratory distress syndrome. Nat Rev Dis Primers 2019;5:18.

Zhang D, Lee H, Haspel JA, Jin Y. Y Long noncoding RNA FOXD3- AS1 regulates oxidative stress-induced apoptosis via sponging microRNA-150. FASEB J 2017;31:4472-81.

Li H, Shi H, Gao M, Ma N, Sun R. Long non-coding RNA CASC2 improved acute lung injury by regulating miR-144-3p/AQP1 axis to reduce lung epithelial cell apoptosis. Cell Biosci 2018;8:1-11.

Zhang Y, Cheng HP, Bao TP, Wang XG, Tian ZF. Expression of long noncoding RNA NANCI in lung tissues of neonatal mice with hyperoxia-induced lung injury and its regulatory effect on NKX2.1. Zhongguo Dang Dai Er Ke Za Zhi 2017;19:215-21.

Saito S, Alkhatib A, Kolls JK, Kondoh Y, Lasky JA. Pharmacotherapy and adjunctive treatment for idiopathic pulmonary fibrosis (IPF). J Thoracic Dis 2019;11:S1740-54.

Wang W, Yang N, Wen R, Liu CF, Zhang TN. Fic, microbiology i. Long noncoding RNA: Regulatory mechanisms and therapeutic potential in Sepsis. Front Cell Infect Microbiol 2021;11:1-14.

King TE Jr., Bradford WZ, Costabel U, Hormel P, Lancaster L, Noble PW, et al. Effect of interferon gamma-1b on survival in patients with idiopathic pulmonary fibrosis (INSPIRE): A multicentre, randomized, placebo-controlled trial. Lancet 2009;374:222-8.

Raghu G, Brown KK, Costabel U, Cottin V, du Bois RM, Lasky JA, et al. Treatment of idiopathic pulmonary fibrosis with etanercept: An exploratory, placebo-controlled trial. Am J Respir Crit Care Med 2008;178:948-55.

King TE Jr., Brown KK, Raghu G, du Bois RM, Lynch DA, Martinez F, et al. BUILD-3: A randomized, controlled trial of bosentan in idiopathic pulmonary fibrosis. Am J Respir Crit Care Med 2011;184:92-9.

Raghu G, Million-Rousseau R, Morganti A, Perchenet L, Behr J; MUSIC Study Group. Macitentan for the treatment of idiopathic pulmonary fibrosis: The randomized controlled MUSIC trial. Eur Respir J 2013;42:1622-32.

Idiopathic Pulmonary Fibrosis Clinical Research Network, Zisman DA, Schwarz M, Anstrom KJ, Collard HR, Flaherty KR, Hunninghake GW, et al. A controlled trial of sildenafil in advanced idiopathic pulmonary fibrosis. N Engl J Med 2010;363:620-8.

Daniels CE, Lasky JA, Limper AH, Mieras K, Gabor E, Schroeder DR. Imatinib treatment for idiopathic pulmonary fibrosis: Randomized placebo-controlled trial results. Am J Respir Crit Care Med 2010;181:604-10.

Raghu G, Behr J, Brown KK, Egan JJ, Kawut SM, Flaherty KR, et al. Treatment of idiopathic pulmonary fibrosis with ambrisentan: A parallel, randomized trial. Ann Intern Med 2013;158:641-9.

Malouf MA, Hopkins P, Snell G, Glanville AR. IPF study investigators. Respirology 2011;16:776-83.

Noth I, Anstrom KJ, Calvert SB, de Andrade J, Flaherty KR, Glazer C, et al. A placebo-controlled randomized trial of warfarin in idiopathic pulmonary fibrosis. Am J Respir Crit Care Med 2012;186:88-95.

Mora A, Pardo A, Selman M. Emerging therapies for IPF a progressive age-related disease. Nat Rev Drug Discov 2017;16:755-72.

Kirkland JL, Tchkonia T. Senolytic drugs: from discovery to translation. J Intern Med 2020;288:518-36.

Mora AL, Rojas M, Pardo A, Selman M. Emerging therapies for idiopathic pulmonary fibrosis, a progressive age-related disease. Nat Rev Drug Discov 2017;16:755-72.

Published

07-04-2022

How to Cite

YADAV, R. K., S. SHAH, A. K. SHRIVASTAVA, and J. GAO. “THE TRANSLATIONAL POSSIBILITY OF TARGETING LncRNAs AS A THERAPEUTIC STRATEGY FOR IDIOPATHIC PULMONARY FIBROSIS”. Asian Journal of Pharmaceutical and Clinical Research, vol. 15, no. 4, Apr. 2022, pp. 13-20, doi:10.22159/ajpcr.2022.v15i4.44143.

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Review Article(s)