MOLECULAR DOCKING STUDY AS THERAPEUTIC APPROACH FOR TARGETING CHOLECYSTOKININ IN PANCREATIC CANCER

Authors

  • Oktavian Arya Putra Faculty Of Military Pharmacy, Indonesia Defense University, IPSC Sentul Area, Sukahati, Citereup, Bogor, West Java 16810
  • Tesia Aisyah Rahmania Faculty Of Military Pharmacy, Indonesia Defense University, IPSC Sentul Area, Sukahati, Citereup, Bogor, West Java 16810, Indonesia https://orcid.org/0000-0002-7134-9547
  • Editha Renesteen Faculty Of Military Pharmacy, Indonesia Defense University, IPSC Sentul Area, Sukahati, Citereup, Bogor, West Java 16810

DOI:

https://doi.org/10.22159/ijap.2024v16i5.51027

Keywords:

pancreatic cancer, cholecystokinin, molecular docking, in silico, 7F8U, barberine

Abstract

Introduction: The seventh most frequent cancer in the world, according to estimates, is pancreatic cancer. Cholecystokinin is a receptor that plays a role as tumor cell proliferation and metastasis. A computational method, docking, samples the structure of tiny molecules incorporated into protein bonds. The benefit of molecular docking is that it allows us to characterize the binding interactions of molecules with the target protein and illustrate fundamental biochemical processes at the atomic level between the targeted compounds and proteins. Objective: This study aims to find a potential ligand that has the most effective and representative interaction with cancer receptors becoming a new therapeutic effect. Materials & Methods: We carried out an in silico study by docking candidate ligands with the Cholecystokinin receptor using the MOE 2015 V.10 application. The selected ligands come from natural ingredients such as curcumin, resveratrol, berberine, baicalein, dioscin, wogonin, and piperine. Result & Discussion: 6 compounds were selected for docking as candidates to determine whether they have interactions with Cholecystokinin receptors. Based on the docking results, berberine is the compound with the lowest Gibbs energy, namely -15.5033 joules/kg.mol and is one of the strongest. Occurs due to several interactions with receptors such as side chain donors for Methionine A121 and B121, asparagine A333 and B333 with amine groups and nitrogen atoms, and Arginine A336 and B336 with negative oxygen atoms. Conclusion : Berberine which is a natural alkaloid, is suitable for devazepide which is a positive control for ligand interactions when tethered to the cholecystokinin receptor. This finding could be a potential new drug for pancreatic cancer. However, further studies, such as in vitro, in vivo, and clinical trials need to be conducted for ordering activity, safety, and safety of new drugs.

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References

Sherwood L. Human physiology : from cells to systems. Canada; 2009.

Vincent A, Herman J, Schulick R, Hruban RH, Goggins M. Pancreatic cancer. The Lancet. 2011 Aug;378(9791):607–20.

Sadr-Azodi O, Oskarsson V, Discacciati A, Videhult P, Askling J, Ekbom A. Pancreatic Cancer Following Acute Pancreatitis: A Population-based Matched Cohort Study. American Journal of Gastroenterology. 2018 Nov;113(11):1711–9.

Dr. David Tuveson. The Early Detection of Pancreatic Cancer in the U.S. Military. Maryland; 2015 Oct.

Kim A, Ha J, Kim J, Cho Y, Ahn J, Cheon C, et al. Natural Products for Pancreatic Cancer Treatment: From Traditional Medicine to Modern Drug Discovery. Nutrients. 2021 Oct 26;13(11):3801.

Smith JP, Wang S, Nadella S, Jablonski SA, Weiner LM. Cholecystokinin receptor antagonist alters pancreatic cancer microenvironment and increases efficacy of immune checkpoint antibody therapy in mice. Cancer Immunology, Immunotherapy. 2018 Feb 17;67(2):195–207.

Brown NJ, Rumsey RDE, Read NW. The Effect of the Cholecystokinin Antagonist Devazepide (L364718) on the Ileal Brake Mechanism in the Rat. Journal of Pharmacy and Pharmacology. 2011 Apr 12;45(12):1033–6.

Lattmann E, Sattayasai J, Narayanan R, Ngoc N, Burrell D, Balaram PN, et al. Cholecystokinin-2/gastrin antagonists: 5-hydroxy-5-aryl-pyrrol-2-ones as anti-inflammatory analgesics for the treatment of inflammatory bowel disease. Medchemcomm. 2017;8(3):680–5.

Offel M, Lattmann P, Singh H, Billington DC, Bunprakob Y, Sattayasai J, et al. Synthesis of Substituted 3‐Anilino‐5‐phenyl‐1,3‐dihydro‐ 2 H ‐1,4‐benzodiazepine‐2‐ones and their Evaluation as Cholecystokinin‐Ligands. Arch Pharm (Weinheim). 2006 Apr 6;339(4):163–73.

Pinzi L, Rastelli G. Molecular Docking: Shifting Paradigms in Drug Discovery. Int J Mol Sci. 2019 Sep 4;20(18):4331.

Meng XY, Zhang HX, Mezei M, Cui M. Molecular Docking: A Powerful Approach for Structure-Based Drug Discovery. Current Computer Aided-Drug Design. 2011 Jun 1;7(2):146–57.

Baihaki MF, Wardhani BWK, Renesteen E, Rahmania TA. CANDIDATES TARGETED THERAPY OF EPIDERMAL GROWTH FACTOR RECEPTOR FOR LUNG CANCER: IN SILICO STUDY. Journal of Southwest Jiaotong University. 2021 Dec 24;56(6):948–58.

Harahap A, Rahmania T, Renesteen E, Wardani B. IN SILICO STUDY: MOLECULAR DOCKING TARGETING KRAS RECEPTOR IN LUNG CANCER. Azerbaijan Medical Journal. 2022 Nov;62(09).

Hevener KE, Zhao W, Ball DM, Babaoglu K, Qi J, White SW, et al. Validation of Molecular Docking Programs for Virtual Screening against Dihydropteroate Synthase. J Chem Inf Model. 2009 Feb 23;49(2):444–60.

Ruswanto R, Mardhiah M, Mardianingrum R, Novitriani K. SINTESIS DAN STUDI IN SILICO SENYAWA 3-NITRO-N’-[(PYRIDIN-4-YL) CARBONYL]BENZOHYDRAZIDE SEBAGAI KANDIDAT ANTITUBERKULOSIS. Chimica et Natura Acta. 2015 Aug 12;3(2).

Smith JP, Fonkoua LK, Moody TW. The Role of Gastrin and CCK Receptors in Pancreatic Cancer and other Malignancies. Int J Biol Sci. 2016;12(3):283–91.

Fino KK, Matters GL, McGovern CO, Gilius EL, Smith JP. Downregulation of the CCK-B receptor in pancreatic cancer cells blocks proliferation and promotes apoptosis. American Journal of Physiology-Gastrointestinal and Liver Physiology. 2012 Jun 1;302(11):G1244–52.

Xu RX, Sun XC, Ma CY, Yao YH, Li XL, Guo YL, et al. Original Article Impacts of berberine on oxidized LDL-induced proliferation of human umbilical vein endothelial cells [Internet]. Vol. 9, Am J Transl Res. 2017. Available from: www.ajtr.org

Zhang H, Bao X, Zhang J, Hu Q, Wei B. Devazepide suppresses cell proliferation and migration, and induces apoptosis in bladder carcinoma. Transl Androl Urol. 2021 May;10(5):2113–21.

Graham S. Baldwin, Arthur Shulkes. CCK Receptors and Cancer. Curr Top Med Chem. 2007 Jun 1;7(12):1232–8.

Smith JP, Kramer S, Bagheri S. Effects of a high-fat diet and L364,718 on growth of human pancreas cancer. Dig Dis Sci. 1990 Jun;35(6):726–32.

Zhang X, He C, Wang M, Zhou Q, Yang D, Zhu Y, et al. Structures of the human cholecystokinin receptors bound to agonists and antagonists. Nat Chem Biol. 2021 Dec 23;17(12):1230–7.

Jain AN, Nicholls A. Recommendations for evaluation of computational methods. J Comput Aided Mol Des. 2008 Mar 13;22(3–4):133–9.

Dwi Agistia D, Purnomo H, Tegar M, Endro Nugroho A. INTERACTION BETWEEN ACTIVE COMPOUNDS FROM Aegle marmelos CORREA AS ANTI INFLAMMATION AGENT WITH COX-1 AND COX-2 RECEPTOR INTERAKSI SENYAWA AKTIF DARI Aegle marmelos CORREA SEBAGAI ANTI INFLAMASI DENGAN RESEPTOR COX-1 DAN COX-2. Traditional Medicine Journal [Internet]. 2013;18(2):2013. Available from: http://www.tcd.uni-

Laksmiani NPL, Vidya Paramita NLP, Wirasuta MAG. IN VITRO AND IN SILICO ANTIOXIDANT ACTIVITY OF PURIFIED FRACTIONS FROM PURPLE SWEET POTATO ETHANOLIC EXTRACT Original Article. Vol. 8, Int J Pharm Pharm Sci. 2016.

Guo L, Chen X, Hu Y, Yu Z, Wang D, Liu J. Curcumin Inhibits Proliferation and Induces Apoptosis of Human Colorectal Cancer Cells by Activating the Mitochondria Apoptotic Pathway. Phytotherapy Research. 2013 Mar 25;27(3):422–30.

EFFENDI. Teori vsepr kepolaran, dan gaya antar molekul edisi 2. 2nd ed. Malang: Bayumedia Publishing; 2006. 1–290 p.

Prananta. Ikatan Hidrogen. In: Universitas Brawijaya. Malang: Universitas Brawijaya; 2013.

Kurniawan Y, Nur M. Studi Pemodelan Dinamika Proton Dalam Ikatan Hidrogen H2O Padatan Satu Dimensi . Berkala Fisika . 2005 Jul;8(3):107–17.

Bare Y. ANALISIS SENYAWA FITOSTEROL Cymbopogon citratus dan Curcuma longa SEBAGAI ANTIALZHEIMER. Vol. 7. 2021.

Elfi TN, Bunga YN, Bare Y. STUDI AKTIVITAS BIOLOGI SECARA IN SILICO SENYAWA NONIVAMIDE DAN NORDIHYDROCAPSAICIN SEBAGAI ANTI INFLAMASI. Florea : Jurnal Biologi dan Pembelajarannya. 2021 Nov 25;8(2):82.

Bare Y, Maulidi A, Sari DRT, Tiring SSND. Studi in Silico Prediksi Potensi 6-Gingerol sebagai inhibitor c-Jun N-terminal kinases (JNK). Jurnal Jejaring Matematika dan Sains. 2019 Dec 31;1(2):59–63.

Bare Y, Helvina M, Krisnamurti GC, S M. The Potential Role of 6-gingerol and 6-shogaol as ACE Inhibitors in Silico Study. Biogenesis: Jurnal Ilmiah Biologi. 2020 Dec 30;8(2):210.

Sari DRT, Safitri A, Cairns JRK, Fatchiyah. Anti-apoptotic activity of anthocyanins has potential to inhibit caspase-3 signaling. J Trop Life Sci. 2020;10(1):15–25.

Sari D, Safitri A, Cairns J, Fatchiyah F. Virtual screening of black rice anthocyanins as antiobesity through inhibiting TLR4 and JNK pathway. J Phys Conf Ser. 2020 Oct 1;1665(1):012024.

Krisnamurti GC et al. Capsaicinoids from Capsicum annuum as an Alternative FabH Inhibitor of Mycobacterium Tuberculosis: In Silico Study. Makara J Sci. 2021 Dec 30;25(4).

Sedov IA, Stolov MA, Solomonov BN. Solvophobic effects and relationships between the Gibbs energy and enthalpy for the solvation process. J Phys Org Chem. 2011 Nov 14;24(11):1088–94.

Wang X, Liu Y, Xu W, Jia L, Chi D, Yu J, et al. Irinotecan and berberine co-delivery liposomes showed improved efficacy and reduced intestinal toxicity compared with Onivyde for pancreatic cancer. Drug Deliv Transl Res. 2021 Oct 15;11(5):2186–97.

TA GC, MOKHTAR M Bin, PETERSON PJ, YAHAYA N Bin. A Comparison of Mandatory and Voluntary Approaches to the Implementation of Globally Harmonized System of Classification and Labelling of Chemicals (GHS) in the Management of Hazardous Chemicals. Ind Health. 2011;49(6):765–73.

Pratt IonaS. Global harmonisation of classification and labelling of hazardous chemicals. Toxicol Lett. 2002 Mar;128(1–3):5–15.

Neag MA, Mocan A, Echeverría J, Pop RM, Bocsan CI, Crişan G, et al. Berberine: Botanical Occurrence, Traditional Uses, Extraction Methods, and Relevance in Cardiovascular, Metabolic, Hepatic, and Renal Disorders. Front Pharmacol. 2018 Aug 21;9.

Abushouk AI, Salem AMA, Abdel-Daim MM. Berberis vulgaris for cardiovascular disorders: A scoping literature review. Vol. 20, Iranian Journal of Basic Medical Sciences. Mashhad University of Medical Sciences; 2017. p. 503–10.

Kysenius K, Brunello CA, Huttunen HJ. Mitochondria and NMDA Receptor-Dependent Toxicity of Berberine Sensitizes Neurons to Glutamate and Rotenone Injury. PLoS One. 2014 Sep 5;9(9):e107129.

Inbaraj JJ, Kukielczak BM, Bilski P, Sandvik SL, Chignell CF. Photochemistry and Photocytotoxicity of Alkaloids from Goldenseal ( Hydrastis canadensis L. ) 1. Berberine. Chem Res Toxicol. 2001 Nov 1;14(11):1529–34.

Published

05-07-2024

How to Cite

Arya Putra , O. ., Aisyah Rahmania, T., & Renesteen, E. (2024). MOLECULAR DOCKING STUDY AS THERAPEUTIC APPROACH FOR TARGETING CHOLECYSTOKININ IN PANCREATIC CANCER. International Journal of Applied Pharmaceutics, 16(5). https://doi.org/10.22159/ijap.2024v16i5.51027

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